Sacha A. F. T. van Hijum : rechercher sur Z-Library

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1

Microbiome dynamics of human epidermis following skin barrier disruption

Patrick LJM Zeeuwen, Jos Boekhorst, Ellen H van den Bogaard, Heleen D de Koning, Peter MC van de Kerkhof, Delphine M Saulnier, Iris I van Swam, Sacha AFT van Hijum, Michiel Kleerebezem, Joost Schalkwi

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2012

2

Correction for Quainoo et al., “Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis”

Quainoo, Scott, Coolen, Jordy P. M., van Hijum, Sacha A. F. T., Huynen, Martijn A., Melchers, Willem J. G., van Schaik, Willem, Wertheim, Heiman F. L.

Journal:

Clinical Microbiology Reviews

Année:

2018

Langue:

english

Fichier:

PDF, 97 KB

english, 2018

3

Comparative and functional genomics of lactococci

Jan Kok, Girbe Buist, Aldert L. Zomer, Sacha A.F.T. Van Hijum, Oscar P. Kuipers

Journal:

FEMS Microbiology Reviews

Année:

2005

Langue:

english

Fichier:

PDF, 540 KB

english, 2005

4

Characterization of the global impact of low temperature gas plasma on vegetative microorganisms

Theresa Winter, Jörn Winter, Martin Polak, Kathrin Kusch, Ulrike Mäder, Rabea Sietmann, Jörg Ehlbeck, Sacha van Hijum, Klaus-Dieter Weltmann, Michael Hecker, Harald Kusch

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 506 KB

english, 2011

5

Purification of a novel fructosyltransferase from Lactobacillus reuteri strain 121 and characterization of the levan produced

Sacha A.F.T. van Hijum, Kees Bonting, Marc J.E.C. van der Maarel, Lubbert Dijkhuizen

Journal:

FEMS Microbiology Letters

Année:

2001

Langue:

english

Fichier:

PDF, 209 KB

english, 2001

6

Fractional Factorial Design for Optimization of the SELDI Protocol for Human Adipose Tissue Culture Media

Ewa Szalowska, Sacha A.F.T. Van Hijum, Han Roelofsen, Annemiek Hoek, Roel J. Vonk, Gerard J. te Meerman

Journal:

Biotechnology Progress

Année:

2007

Langue:

english

Fichier:

PDF, 254 KB

english, 2007

7

Transcriptome analysis and related databases ofLactococcus lactis

Oscar P. Kuipers, Anne de Jong, Richard J. S. Baerends, Sacha A. F. T. van Hijum, Aldert L. Zomer, Harma A. Karsens, Chris D. den Hengst, Naomi E. Kramer, Girbe Buist, Jan Kok

Journal:

Antonie van Leeuwenhoek

Année:

2002

Langue:

english

Fichier:

PDF, 608 KB

english, 2002

8

Comparative and functional genomics of lactococci

Jan Kok, Girbe Buist, Aldert L. Zomer, Sacha A.F.T. van Hijum, Oscar P. Kuipers

Journal:

FEMS Microbiology Reviews

Année:

2005

Langue:

english

Fichier:

PDF, 540 KB

english, 2005

9

Genome (re-)annotation and open-source annotation pipelines

Roland J. Siezen, Sacha A. F. T. Van Hijum

Journal:

Microbial Biotechnology

Année:

2010

Langue:

english

Fichier:

PDF, 563 KB

english, 2010

10

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays

Roland J. Siezen, Jumamurat R. Bayjanov, Giovanna E. Felis, Marijke R. van der Sijde, Marjo Starrenburg, Douwe Molenaar, Michiel Wels, Sacha A. F. T. van Hijum, Johan E. T. van Hylckama Vlieg

Journal:

Microbial Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 843 KB

english, 2011

11

SIMAGE:simulation of DNA-microarraygeneexpression data

Casper J Albers, Ritsert C Jansen, Jan Kok, Oscar P Kuipers, Sacha AFT van Hijum

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2006

12

DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites

Evert-Jan Blom, Sacha AFT van Hijum, Klaas J Hofstede, Remko Silvis, Jos BTM Roerdink, Oscar P Kuipers

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2008

13

Supervised Lowess normalization of comparative genome hybridization data – application to lactococcal strain comparisons

Sacha AFT van Hijum, Richard JS Baerends, Aldert L Zomer, Harma A Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P Kuipers

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 753 KB

english, 2008

14

A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacteriumKuenenia stuttgartiensis

Marnix H Medema, Miaomiao Zhou, Sacha AFT van Hijum, Jolein Gloerich, Hans JCT Wessels, Roland J Siezen, Marc Strous

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2010

15

A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data

Sacha AFT van Hijum, Anne de Jong, Richard JS Baerends, Harma A Karsens, Naomi E Kramer, Rasmus Larsen, Chris D den Hengst, Casper J Albers, Jan Kok, Oscar P Kuipers

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2005

16

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources

Evert Jan Blom, Rainer Breitling, Klaas Jan Hofstede, Jos BTM Roerdink, Sacha AFT van Hijum, Oscar P Kuipers

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2008

17

Purification of a novel fructosyltransferase from Lactobacillus reuteri strain 121 and characterization of the levan produced

Sacha A.F.T. van Hijum, Kees Bonting, Marc J.E.C. van der Maarel, Lubbert Dijkhuizen

Journal:

FEMS Microbiology Letters

Année:

2001

Langue:

english

Fichier:

PDF, 212 KB

english, 2001

18

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching forLactobacillus plantarumstrains

Bayjanov, Jumamurat R, Molenaar, Douwe, Tzeneva, Vesela, Siezen, Roland J, van Hijum, Sacha A F T

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 296 KB

english, 2012

19

Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes

Gori, Fabio, Tringe, Susannah G, Folino, Gianluigi, van Hijum, Sacha AFT, Op den Camp, Huub JM, Jetten, Mike SM, Marchiori, Elena

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2013

20

Multifactorial diversity sustains microbial community stability

Erkus, Oylum, de Jager, Victor CL, Spus, Maciej, van Alen-Boerrigter, Ingrid J, van Rijswijck, Irma MH, Hazelwood, Lucie, Janssen, Patrick WM, van Hijum, Sacha AFT, Kleerebezem, Michiel, Smid, Eddy J

Journal:

The ISME Journal

Année:

2013

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2013

21

A novel scheme to assess factors involved in the reproducibility of DNA-microarray data

Sacha AFT van Hijum, Anne de Jong, Richard JS Baerends, Harma A Karsens…

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 750 KB

english, 2005

22

Application of state-of-art sequencing technologies to indigenous food fermentations

van Hijum, Sacha AFT, Vaughan, Elaine E, Vogel, Rudi F

Journal:

Current Opinion in Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2013

23

Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer

Dutilh, Bas E., Backus, Lennart, van Hijum, Sacha A.F.T., Tjalsma, Harold

Journal:

Best Practice & Research Clinical Gastroenterology

Année:

2013

Langue:

english

Fichier:

PDF, 937 KB

english, 2013

24

Effect of growth rate and selection pressure on rates of transfer of an antibiotic resistance plasmid between E. coli strains

Schuurmans, Jasper M., van Hijum, Sacha A.F.T., Piet, Jurgen R., Händel, Nadine, Smelt, Jan, Brul, Stanley, ter Kuile, Benno H.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 897 KB

english, 2014

25

Genotypic adaptations associated with prolonged persistence of Lactobacillus plantarum in the murine digestive tract

van Bokhorst-van de Veen, Hermien, Smelt, Maaike J., Wels, Michiel, van Hijum, Sacha A. F. T., de Vos, Paul, Kleerebezem, Michiel, Bron, Peter A.

Journal:

Biotechnology Journal

Année:

2013

Langue:

english

Fichier:

PDF, 355 KB

english, 2013

26

Fermentation-induced variation in heat and oxidative stress phenotypes ofLactococcus lactisMG1363 reveals transcriptome signatures for robustness

Dijkstra, Annereinou R, Alkema, Wynand, Starrenburg, Marjo JC, Hugenholtz, Jeroen, van Hijum, Sacha AFT, Bron, Peter A

Journal:

Microbial Cell Factories

Année:

2014

Langue:

english

Fichier:

PDF, 533 KB

english, 2014

27

Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology

Szalowska, Ewa, Tesfay, Haftu A, van Hijum, Sacha A F T, Kersten, Sander

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2014

28

From microbial gene essentiality to novel antimicrobial drug targets

Mobegi, Fredrick M, van Hijum, Sacha AFT, Burghout, Peter, Bootsma, Hester J, de Vries, Stefan PW, Jongh, Christa E, Simonetti, Elles, Langereis, Jeroen D, Hermans, Peter WM, de Jonge, Marien I, Zomer

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 576 KB

english, 2014

29

Bacillus pumilus Reveals a Remarkably High Resistance to Hydrogen Peroxide Provoked Oxidative Stress

Handtke, Stefan, Schroeter, Rebecca, Jürgen, Britta, Methling, Karen, Schlüter, Rabea, Albrecht, Dirk, van Hijum, Sacha A. F. T., Bongaerts, Johannes, Maurer, Karl-Heinz, Lalk, Michael, Schweder, Thom

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 942 KB

english, 2014

30

Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1

Todt, Tilman J., Wels, Michiel, Bongers, Roger S., Siezen, Roland S., van Hijum, Sacha A. F. T., Kleerebezem, Michiel, Song, Qing

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 346 KB

english, 2012

31

Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine

Lamontanara, Antonella, Caggianiello, Graziano, Orrù, Luigi, Capozzi, Vittorio, Michelotti, Vania, Bayjanov, Jumamurat R., Renckens, Bernadet, van Hijum, Sacha A. F. T., Cattivelli, Luigi, Spano, Gius

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 158 KB

english, 2015

32

Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice

Dingemanse, Celia, Belzer, Clara, van Hijum, Sacha A.F.T., Günthel, Marie, Salvatori, Daniela, Dunnen, Johan T. den, Kuijper, Ed J., Devilee, Peter, de Vos, Willem M., van Ommen, GertJan B., Robanus-M

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 5.01 MB

english, 2015

33

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

Cremers, Amelieke JH, Zomer, Aldert L, Gritzfeld, Jenna F, Ferwerda, Gerben, van Hijum, Sacha AFT, Ferreira, Daniela M, Shak, Joshua R, Klugman, Keith P, Boekhorst, Jos, Timmerman, Harro M, de Jonge,

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2014

34

Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877

Martino, Maria Elena, Bayjanov, Jumamurat R., Joncour, Pauline, Hughes, Sandrine, Gillet, Benjamin, Kleerebezem, Michiel, Siezen, Roland, van Hijum, Sacha A. F. T., Leulier, François

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 151 KB

english, 2015

35

Resequencing of the Lactobacillus plantarum Strain WJL Genome

Martino, Maria Elena, Bayjanov, Jumamurat R., Joncour, Pauline, Hughes, Sandrine, Gillet, Benjamin, Kleerebezem, Michiel, Siezen, Roland, van Hijum, Sacha A. F. T., Leulier, François

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 150 KB

english, 2015

36

Draft Genome Sequence of Streptococcus thermophilus C106, a Dairy Isolate from an Artisanal Cheese Produced in the Countryside of Ireland

Wels, Michiel, Serrano, L. Mariela, Eibrink, Beerd-Jan, Backus, Lennart, Bongers, Roger S., Vriesendorp, Bastienne, Siezen, Roland J., van Hijum, Sacha A. F. T., Meijer, Wilco C.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 142 KB

english, 2015

37

Use of propidium monoazide for selective profiling of viable microbial cells during Gouda cheese ripening

Erkus, Oylum, de Jager, Victor C.L., Geene, Renske T.C.M., van Alen-Boerrigter, Ingrid, Hazelwood, Lucie, van Hijum, Sacha A.F.T., Kleerebezem, Michiel, Smid, Eddy J.

Journal:

International Journal of Food Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 489 KB

english, 2016

38

Saturation and Quantization Reduction in Microarray Experiments using Two Scans at Different Sensitivities

García de la Nava, Jorge, van Hijum, Sacha, Trelles, Oswaldo

Journal:

Statistical Applications in Genetics and Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 407 KB

english, 2004

39

Draft Genome Sequence of Lactobacillus plantarum SF2A35B

Bron, Peter A., Lee, I-Chiao, Backus, Lennart, van Hijum, Sacha A. F. T., Wels, Michiel, Kleerebezem, Michiel

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 139 KB

english, 2016

40

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

Martino, Maria Elena, Bayjanov, Jumamurat R., Caffrey, Brian E., Wels, Michiel, Joncour, Pauline, Hughes, Sandrine, Gillet, Benjamin, Kleerebezem, Michiel, van Hijum, Sacha A.F.T., Leulier, François

Journal:

Environmental Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2016

41

Prospects for improved control of dairy-relevant sporeformers using -omics technologies

Wells-Bennik, Marjon H.J., Driehuis, Frank, van Hijum, Sacha A.F.T.

Journal:

Current Opinion in Food Science

Année:

2016

Langue:

english

Fichier:

PDF, 257 KB

english, 2016

42

Comment on “Skin Microbiome Surveys Are Strongly Influenced by Experimental Design”

Zeeuwen, Patrick L.J.M., Boekhorst, Jos, Ederveen, Thomas H.A., Kleerebezem, Michiel, Schalkwijk, Joost, van Hijum, Sacha A.F.T., Timmerman, Harro M.

Journal:

The Journal of Investigative Dermatology

Année:

2016

Langue:

english

Fichier:

PDF, 411 KB

english, 2016

43

Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes

Nebenzahl-Guimaraes, Hanna, van Laarhoven, Arjan, Farhat, Maha R, Koeken, Valerie ACM, Mandemakers, Jornt J, Zomer, Aldert, van Hijum, Sacha AFT, Netea, Mihai G, Murray, Megan, van Crevel, Reinout, va

Journal:

American Journal of Respiratory and Critical Care Medicine

Année:

2016

Langue:

english

Fichier:

PDF, 2.68 MB

english, 2016

44

The post-vaccine microevolution of invasive Streptococcus pneumoniae

Cremers, Amelieke J. H., Mobegi, Fredrick M., de Jonge, Marien I., van Hijum, Sacha A. F. T., Meis, Jacques F., Hermans, Peter W. M., Ferwerda, Gerben, Bentley, Stephen D., Zomer, Aldert L.

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 781 KB

english, 2015

45

Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data

Mobegi, Fredrick M., Cremers, Amelieke J. H., de Jonge, Marien I., Bentley, Stephen D., van Hijum, Sacha A. F. T., Zomer, Aldert

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2017

46

Draft Genome Sequences of 24 Lactococcus lactis Strains

Backus, Lennart, Wels, Michiel, Boekhorst, Jos, Dijkstra, Annereinou R., Beerthuyzen, Marke, Kelly, William J., Siezen, Roland J., van Hijum, Sacha A. F. T., Bachmann, Herwig

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 133 KB

english, 2017

47

Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains

Wels, Michiel, Backus, Lennart, Boekhorst, Jos, Dijkstra, Annereinou, Beerthuyzen, Marke, Siezen, Roland J., Bachmann, Herwig, van Hijum, Sacha A. F. T.

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 126 KB

english, 2017

48

Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis

Quainoo, Scott, Coolen, Jordy P. M., van Hijum, Sacha A. F. T., Huynen, Martijn A., Melchers, Willem J. G., van Schaik, Willem, Wertheim, Heiman F. L.

Journal:

Clinical Microbiology Reviews

Année:

2017

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2017

49

Draft Genome Sequence of Lactobacillus delbrueckii subsp . bulgaricus LBB.B5

Urshev, Zoltan, Hajo, Karima, Lenoci, Leonardo, Bron, Peter A., Dijkstra, Annereinou, Alkema, Wynand, Wels, Michiel, Siezen, Roland J., Minkova, Svetlana, van Hijum, Sacha A. F. T.

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 152 KB

english, 2016

50

Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

Ederveen, Thomas H. A., Ferwerda, Gerben, Ahout, Inge M., Vissers, Marloes, de Groot, Ronald, Boekhorst, Jos, Timmerman, Harro M., Huynen, Martijn A., van Hijum, Sacha A. F. T., de Jonge, Marien I.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.18 MB

english, 2018